Medical Policy

D-1002-003

Policy Id

HHO-DE-MP-1002

Topic

Pharmacogenetic Testing

Section

Diagnostic Screening

Effective Date

Jun 16, 2025

Issued Date

May 16, 2025

Last Revision Date

05/2025

Annual Review

05/2026

Prepared By

J Fletcher

DISCLAIMER

Highmark medical policy is intended to serve only as a general reference resource regarding coverage for the services described. This policy does not constitute medical advice and is not intended to govern or otherwise influence medical decisions.

POLICY STATEMENT

This policy provides information regarding the coverage of, as determined by applicable federal and/or state legislation. 

This policy is designed to address medical necessity guidelines that are appropriate for the majority of individuals with a particular disease, illness or condition. Each person’s unique clinical circumstances warrant individual consideration, based upon review of applicable medical records.

The qualifications of the policy will meet the standards of the National Committee for Quality Assurance (NCQA) and the Delaware Department of Health and Social Services (DHSS) and all applicable state and federal regulations. 

Policy Position

Prior Authorization

Prior Authorization may be required. Please validate codes on the Prior Authorization Lookup Tool https://www.highmarkhealthoptions.com/providers/prior-auth-lookup

Procedures

Pharmacogenetic testing (PGx) for behavioral health is investigational and therefore, not medically necessary.

PGx testing is not considered reasonable and necessary merely on the basis of a patient having a particular diagnosis. Unless the record reflects that the treating clinician has already considered nongenetic factors to make a preliminary drug selection, PGx testing is not considered reasonable and necessary (CMS, 2020).

PGx testing is not covered when a treating clinician is not considering treatment with a medication that has an actionable drug-gene interaction, or when the use of a medication with a drug-gene interaction is not reasonable and necessary (CMS, 2020).

Genes not identified as having actionable use are not considered reasonable and necessary. The algorithms employed in combinatorial testing are also not currently considered reasonable and necessary components of multi-gene testing (CMS, 2020).

The clinical record must clearly show the use of or intent to prescribe a drug that has known drug-gene interactions that require a PGx test to be ordered to define the safe use of that drug in that patient (CMS, 2020).

If a treating clinician orders a single gene test or a test for a particular allele(s), but as a matter of operational practicality, the laboratory tests that single gene or allele on a platform that looks for variants in other genes/alleles as well, that particular test done in that particular instance is considered a single gene/allele test for coverage purposes. In this scenario the provider may bill for the component of the test that was reasonable and necessary (in this example, the single gene test) (CMS, 2020).

A multi-gene panel is considered reasonable and necessary if more than one single gene on that panel would be considered reasonable and necessary for safe use of the medication in question or if multiple drugs are being considered (each fulfilling the criteria of actionable gene-drug interactions identified above) that have different relevant genes. Additionally, a gene panel must contain at a minimum all the necessary relevant gene/allele content required for their indicated use to meet clinical utility requirements. Such minimum criteria are determined by experts including relevant associations such as the Association for Molecular Pathology and are considered during the technical assessment. A multi-gene panel is not considered reasonable and necessary if only a single gene on the panel is considered reasonable and necessary (CMS, 2020).

If two or more single genes are tested, rather than a multi-gene panel, then the record must reflect that a clinician individually ordered each gene, and each single gene must individually be reasonable and necessary at the time they are ordered (CMS, 2020).

The ordering provider of a PGx test is restricted to providers who have the licensure, qualifications, and necessary experience/training to both diagnose the condition being treated and also to prescribe medications (the provider must be able to do both) for the condition either independently or in an arrangement as required by all the applicable state laws (CMS, 2020).

Pharmacogenetic testing of CYP2C9 or VKORC1 alleles to predict warfarin responsiveness is covered only when provided to members who are candidates for anticoagulation therapy with warfarin who:

  • Have not been previously tested for CYP2C9 or VKORC1 alleles; and
  • Have received fewer than five days of warfarin in the anticoagulation regimen for which the testing is ordered: and
  • Are enrolled in a prospective, randomized, controlled clinical study when that study meets the standards specified in the decision memorandum (DM).

Once-per-lifetime genotyping for cytochrome P450 polymorphisms is clinically proven and, therefore, medically necessary for members with acute coronary syndrome undergoing percutaneous coronary intervention, in which clopidogrel (Plavix) is a treatment option (Scott, 2013).

In order for services to be covered, the patients' medical record must clearly reflect the following:

  • The patient has a diagnosis for which pharmacologic therapy is reasonable and necessary, and the drug or drugs that the clinician is considering using must be reasonable and necessary for the treatment of the patient’s diagnosis.
  • The clinician has made an initial personalized decision for the patient based on the patient’s diagnosis, the patient’s other medical conditions, other medications the patient is taking, professional judgement, clinical science and basic science pertinent to the drug (e.g., mechanism of action, side effects), the patient’s past medical history and when pertinent family history and the patient's preferences and values.
  • The provider performing the service must have a record of what drug(s) is/are being considered and for what indication(s) to ensure the test performed is reasonable and necessary (CMS, 2020).

Post-payment Audit Statement

The medical record must include documentation that reflects the medical necessity criteria and is subject to audit by Highmark Health Options at any time pursuant to the terms of your provider agreement.

Place of Service

The place of service for laboratory testing is outpatient. 

CPT Code

Description

81220

CFTR Gene Analysis Common Variants.

81230

CYP3A4 Gene Analysis Common Variants.

81231

CYP3A5 Gene Analysis Common Variants.

81232

DPYD Gene Analysis Common Variants.

81247

G6PD Gene Analysis Common Variants.

81283

IFNL3 Gene Analysis RS12979860 Variant.

81328

SLCO1B1 Gene Analysis Common Variants.

81335

TPMT Gene Analysis Common Variants.

81346

TYMS Gene Analysis Common Variants.

82955

Glucose-6-phosphate Dehydrogenase (g6pd); Quantitative

84431

Thromboxane Metabolite(s), including Thromboxane if Performed, Urine.

88360

Morphometric Analysis, Tumor Immunohistochemistry (eg, Her-2/neu, Estrogen Receptor/progesterone Receptor), Quantitative or Semiquantitative, Per Specimen, Each Single Antibody Stain Procedure; Manual.

References

Centers for Medicare and Medicaid Services. (2009). Decision Memorandum for Pharmacogenetic Testing to Predict Warfarin Responsiveness. https://www.cms.gov/medicare-coverage-database/details/nca-decision-memo.aspx?NCAId=224

Centers for Medicare and Medicaid Services. (2020). Local Coverage Determination (LCD): MolDX: Pharmacogenomics Testing. https://www.cms.gov/medicare-coverage-database/details/lcd-details.aspx?LCDId=38337

Penn Medicine. (2021). Pharmacogenetic Testing. https://www.pennmedicine.org/for-patients-and-visitors/find-a-program-or-service/translational-medicine-and-human-genetics/pharmacogenetics

Scott, S. A., Sangkuhl, K., Stein, C. M., Hulot, J. S., Mega, J. L., Roden, D. M., Klein, T. E., Sabatine, M. S., Johnson, J. A., Shuldiner, A. R., & Clinical Pharmacogenetics Implementation Consortium (2013). Clinical Pharmacogenetics Implementation Consortium guidelines for CYP2C19 genotype and clopidogrel therapy: 2013 update. Clinical pharmacology and therapeutics94(3), 317–323. https://doi.org/10.1038/clpt.2013.105